Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10199058_10200451_F

Intron Information:

Intron Rank:

130747

Intron Class:

major

Intron Phase:

Intron Coordinates:

10199058 - 10200451

Intron Length:

1394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTGCCA

5'SS Class:

major

3'SS Sequence:

TCTTTATGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

CACTCTTTATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.9

0.42

1.1

42.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

78.2

0.64

0.9

77.7

35.6

Minor 5ss

29.7

-2.3

3.4

39.7

45.8

Minor BPS

49.2

0.02

1.9

64.09

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020185

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017838

10198999 - 10201985

2987