About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10223765_10225501_F

Intron Information:

Intron Rank:
135464
Intron Class:
major
Intron Phase:
Intron Coordinates:
10223765 - 10225501
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAG
5'SS Class:
major
3'SS Sequence:
TTACCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AAGTCCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57
42.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.8
0.69
0.8
75.8
32.5
Minor 5ss
27.6
-2.6
3.6
37.4
47.3
Minor BPS
68.9
0.67
1.6
79.65
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022879
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027445
10223682 - 10227220
3539