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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10281063_10281414_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10281063 - 10281414
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTTGCATACTA
Flanking Amino Acid:
APEETAPLLRGSKLLILVLC
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77.2
0.61
0.8
74.6
36.4
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
47.3
-0.2
2.2
66.38
40.5

Associated Gene:

Gene:
RTN4R
Ensembl Gene ID:
ENSAPLG00000007913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008201
10279636 - 10281789
2154
ENSAPLT00000029711
10279636 - 10281789
2154