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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10281063_10350113_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10281063 - 10350113
Intron Length:
69051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTTGCATACTA
Flanking Amino Acid:
MKRAIAEGSKLLILVLC
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.8
39.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77.2
0.61
0.8
74.6
36.4
Minor 5ss
31.6
-2.1
3.3
40.8
45.6
Minor BPS
47.3
-0.2
2.2
66.38
40.5

Associated Gene:

Gene:
RTN4R
Ensembl Gene ID:
ENSAPLG00000007913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028045
10279222 - 10350135
70914