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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10281569_10281671_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
10281569 - 10281671
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
CTTACATTTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTATCTTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
58.8
0.2
1.7
69.7
40.4
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
54.4
0.22
1.8
73.28
43.5

Associated Gene:

Gene:
RTN4R
Ensembl Gene ID:
ENSAPLG00000007913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008201
10279636 - 10281789
2154