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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10442705_10443676_R

Intron Information:

Intron Rank:
151685
Intron Class:
major
Intron Phase:
Intron Coordinates:
10442705 - 10443676
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATGCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTACTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
76.7
37
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
61
0.34
1.8
72.62
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029160
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031060
10442664 - 10444161
1498
ENSAPLT00000022799
10442664 - 10445234
2571