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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1051864_1061221_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1051864 - 1061221
Intron Length:
9358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
FFVMCSAFAAGLEFAYSAAP
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.85
0.8
84
30
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012261
1047790 - 1073101
25312