About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10537200_10541318_R

Intron Information:

Intron Rank:
130922
Intron Class:
major
Intron Phase:
Intron Coordinates:
10537200 - 10541318
Intron Length:
4119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATATTGGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
78.2
0.63
0.9
74.9
38.9
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
46.8
-0.2
2.5
65.86
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017660
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018594
10537056 - 10544645
7590