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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1057429_1061221_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1057429 - 1061221
Intron Length:
3793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCCTCCCACT
Flanking Amino Acid:
FFVMCSAFAAGILESNRLKI
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
64.3
0.32
0.9
60.6
35
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
46.4
-0.2
2.2
74.5
42.1

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045774
1046702 - 1073101
26400
ENSAPLT00000024868
1009996 - 1073101
63106