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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10591803_10595827_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10591803 - 10595827
Intron Length:
4025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGCGCG
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
TGGCCCTTATCT
Flanking Amino Acid:
GPAPAGRQPQPSCTSAAEKE
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.16
1.3
48
42.8
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
85
0.79
0.6
84.9
22.7
Minor 5ss
33.1
-1.9
3.3
43.5
44
Minor BPS
65.4
0.56
1.7
78.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007914
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008242
10590478 - 10600898
10421