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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10595863_10596202_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10595863 - 10596202
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAT
U12 Branch Point Sequence:
GCCTCTTCCACC
Flanking Amino Acid:
CTSAAEKERGGAEQREKKQH
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
57.8
0.2
1.1
66.6
38.6
Major PPT
76.1
0.59
0.8
70.4
28.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
47
-0.2
2
54.58
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007914
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008242
10590478 - 10600898
10421