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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10597341_10597632_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10597341 - 10597632
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACTT
Flanking Amino Acid:
SKLLLIPNMKTRQLEPLFSH
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.2
0.7
0.8
78.2
28.9
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
49.2
0.02
1.8
66.82
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007914
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008242
10590478 - 10600898
10421