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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10597969_10598138_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10597969 - 10598138
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CACCTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TCTCTGCCACCT
Flanking Amino Acid:
IFNTYQCYLKEAYNNVTVDV
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
66.4
0.37
0.8
57.8
32.8
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
36.5
-0.9
2.4
57.59
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007914
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008242
10590478 - 10600898
10421