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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10598505_10598614_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10598505 - 10598614
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACT
5'SS Class:
major
3'SS Sequence:
GTTTGGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTTCCTAACA
Flanking Amino Acid:
NEDTIKFTLRRMMELGIHPS
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.1
39.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
77.2
0.61
1
69.6
41.6
Minor 5ss
28.1
-2.5
3.3
39.9
45.9
Minor BPS
69
0.59
1.7
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007914
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008242
10590478 - 10600898
10421