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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1061391_1062702_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1061391 - 1062702
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
AATTTGCTAACT
Flanking Amino Acid:
IANDTNSVHTFPAAWLTMFD
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
73.1
43.9
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
76.9
0.61
0.8
74.5
35
Minor 5ss
35.6
-1.6
2.7
43.3
43.7
Minor BPS
49.9
0.07
2.3
76.04
40.3

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024868
1009996 - 1073101
63106
ENSAPLT00000012261
1047790 - 1073101
25312
ENSAPLT00000045774
1046702 - 1073101
26400