About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1062781_1063823_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1062781 - 1063823
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTAATGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTCCCTAATG
Flanking Amino Acid:
LIPYWTVYFQMQTTYVLQSL
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
61.4
0.26
1
55.1
39.2
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
67.1
0.4
1.8
71.93
41.3

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012261
1047790 - 1073101
25312
ENSAPLT00000045774
1046702 - 1073101
26400
ENSAPLT00000024868
1009996 - 1073101
63106