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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1063993_1064707_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1063993 - 1064707
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTCTATAACT
Flanking Amino Acid:
RRRPMERSTNSEGRGVLQQS
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
79.9
1.02
1.5
97
27.3

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045774
1046702 - 1073101
26400
ENSAPLT00000024868
1009996 - 1073101
63106
ENSAPLT00000012261
1047790 - 1073101
25312