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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10646892_10647007_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10646892 - 10647007
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CCAATCTCACGT
Flanking Amino Acid:
GFLVATGSICAMNTVLLSNL
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.8
39.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
69.1
0.43
0.9
65.2
36.3
Minor 5ss
31.1
-2.2
2.6
35.7
40.4
Minor BPS
39.6
-0.7
1.9
48.64
44.5

Associated Gene:

Gene:
SLC7A4
Ensembl Gene ID:
ENSAPLG00000008442
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036486
10644442 - 10648626
4185
ENSAPLT00000033546
10645841 - 10649311
3471
ENSAPLT00000008770
10644442 - 10649085
4644