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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10647685_10648891_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10647685 - 10648891
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTCTCCATCT
Flanking Amino Acid:
EQQRSTQTFQACSSTLATAS
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
45.2
-0.2
2.1
65.56
44.9

Associated Gene:

Gene:
SLC7A4
Ensembl Gene ID:
ENSAPLG00000008442
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033546
10645841 - 10649311
3471