About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10648376_10648891_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10648376 - 10648891
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTCTCCATCT
Flanking Amino Acid:
WLRFTVWLILGLLVYFGYGI
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
45.2
-0.2
2.1
65.56
44.9

Associated Gene:

Gene:
SLC7A4
Ensembl Gene ID:
ENSAPLG00000008442
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008770
10644442 - 10649085
4644