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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10663655_10664241_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10663655 - 10664241
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TGTTCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
ACTGCTCTACTA
Flanking Amino Acid:
FGTGIAFFGAATVVCDLVLL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
78.6
0.64
0.8
70.7
36.1
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
44.3
-0.4
1.9
53.37
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008683
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009141
10661753 - 10665697
3945