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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10664320_10665200_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10664320 - 10665200
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GGTCATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
GTACATAGAACA
Flanking Amino Acid:
DFYWKEKFEEAKPPKVWSDL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
76.3
0.59
1
69.1
41.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
43.5
-0.4
1.8
54.12
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008683
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009141
10661753 - 10665697
3945