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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10664821_10666323_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10664821 - 10666323
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAGGAGCC
5'SS Class:
major
3'SS Sequence:
GCACTATGCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
CCAAGCTGAGCA
Flanking Amino Acid:
YLQQFTSGGRARKSGAELQH
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
69.8
35.8
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
59.9
0.22
1
53
40.5
Minor 5ss
19.5
-3.5
4
24.8
37
Minor BPS
40.9
-0.6
2
45.68
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009627
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034246
10664762 - 10668450
3689