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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10666556_10666679_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10666556 - 10666679
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
TCTGCCCACACA
Flanking Amino Acid:
LGYIGNLQEKVPELAGFLLL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
68.2
0.41
0.9
61.6
34
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
43.2
-0.5
2.4
59.22
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009627
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042596
10666262 - 10667777
1516
ENSAPLT00000034246
10664762 - 10668450
3689
ENSAPLT00000010017
10663806 - 10669443
5638