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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10666794_10667111_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10666794 - 10667111
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
GCCCCCGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAGAG
U12 Branch Point Sequence:
GCCCCCGTTACA
Flanking Amino Acid:
LGEGMMLQLKYSLLPRYYQL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
42.1
-0.4
1.3
36
32.6
Major PPT
68.1
0.41
0.9
59.7
35.6
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
44.6
-0.4
2.3
53.39
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009627
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034246
10664762 - 10668450
3689
ENSAPLT00000010017
10663806 - 10669443
5638
ENSAPLT00000042596
10666262 - 10667777
1516