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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10677740_10681987_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10677740 - 10681987
Intron Length:
4248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGGCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTGTTCTAACC
Flanking Amino Acid:
DELKFVAFYTKSDEVVAVAS
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
59.1
0.21
0.9
50
39.3
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
48.9
-0.1
1.8
58.67
40.7

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010064
10673605 - 10706535
32931