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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10682064_10682569_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10682064 - 10682569
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
CAACCCATGATT
Flanking Amino Acid:
AMFGKSIRYAGHGEGFDDVV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
49.4
0.04
1.6
63.35
40.7

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931
ENSAPLT00000042808
10673605 - 10706535
32931