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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10682669_10683366_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10682669 - 10683366
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TATTGCTTATTC
Flanking Amino Acid:
VPHWQMAHMHGRIAALNMLA
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.3
0.73
0.8
73.3
37.2
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
57.5
0.21
2
71.3
40.4

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931