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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10683485_10683816_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10683485 - 10683816
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGCAAT
U12 Branch Point Sequence:
ACCCCCCCAACA
Flanking Amino Acid:
DSKGFIVVNKMMQTNIPGVF
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
53
0.07
1.4
62.5
41.7
Major PPT
83.5
0.75
0.7
81.1
24.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
47.1
-0.2
1.9
56.47
42.3

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931
ENSAPLT00000042808
10673605 - 10706535
32931