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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10683894_10684478_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10683894 - 10684478
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAG
U12 Branch Point Sequence:
AGAGGAAAAACA
Flanking Amino Acid:
LRADVCVVGIGAVPATGFLK
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
51.9
0.05
1.6
51.5
43.9
Major PPT
83.7
0.76
0.7
77.7
24.2
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
34
-1.2
2.1
41.54
38.6

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931