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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10686620_10687694_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10686620 - 10687694
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TTCTGTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCCGCTGGGACG
Flanking Amino Acid:
NVVIVGASFLGMEVAAYLAE
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.2
36.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
41.2
-1
3
53.8
44.4
Minor BPS
36.9
-1.1
2
33.65
41.4

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931