About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10689592_10690530_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10689592 - 10690530
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GAAATAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATCTCTTAACA
Flanking Amino Acid:
YDIEVLTEMQVAAVDIKNKI
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
62.5
0.28
1.1
56.4
47.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
72
0.69
1.2
73.71
37.7

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931