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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10693481_10694364_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10693481 - 10694364
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGGTGGCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
AGGATAATGACT
Flanking Amino Acid:
EKVYIRASKQALQTQRRTKM
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
67
0.42
1.1
57.7
39
Major PPT
56
0.14
1.1
50
43.9
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
42.9
-0.4
1.8
56.8
39.1

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931