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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10694993_10696822_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10694993 - 10696822
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTG
5'SS Class:
major
3'SS Sequence:
GTCTTTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTGTCTTTCACG
Flanking Amino Acid:
CPHYGAPLVKGVLSKGRVRC
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
65.3
46
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.2
0.54
0.9
69.6
35.8
Minor 5ss
39.3
-1.2
2.8
50
46.3
Minor BPS
57.7
0.1
1.9
62.35
46.1

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931