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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10696933_10700497_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10696933 - 10700497
Intron Length:
3565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCTCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
TGTTCTGCCACC
Flanking Amino Acid:
VCHVKDLENGQMREVDLGCG
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
74.5
0.55
0.7
73.2
25.1
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
44.1
-0.4
2.5
62.91
42.8

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931
ENSAPLT00000042808
10673605 - 10706535
32931