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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10700712_10706351_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10700712 - 10706351
Intron Length:
5640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAATC
5'SS Class:
major
3'SS Sequence:
TTTGTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATG
Flanking Amino Acid:
MGGCFSKPKPVEVKIEVVIP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
75
35.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
38.1
-1.3
3.1
51.9
44.9
Minor BPS
67.4
0.41
1.4
69.97
38.4

Associated Gene:

Gene:
AIFM3
Ensembl Gene ID:
ENSAPLG00000009646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042808
10673605 - 10706535
32931
ENSAPLT00000030875
10673605 - 10706535
32931
ENSAPLT00000010064
10673605 - 10706535
32931