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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10718137_10718247_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10718137 - 10718247
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
TGCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CGGCTGTCACCT
Flanking Amino Acid:
FVQEDGSRFKVALPYRPYFY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
73.1
0.52
0.8
65.6
36.1
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
37.4
-0.8
2.2
49.42
44.1

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010455
10717508 - 10744851
27344