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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10718929_10719292_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10718929 - 10719292
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
CATTACCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTCATTACCT
Flanking Amino Acid:
ETVPKEDLDLPNHLVGLKRN
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.3
76.2
39
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.4
0.62
0.9
70
35.8
Minor 5ss
43.3
-0.7
2.6
57.3
41.3
Minor BPS
60.6
0.41
1.9
79.5
42.4

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344