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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10724836_10725548_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10724836 - 10725548
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTTCTGAGCC
Flanking Amino Acid:
CTIIPMEPDEVLRKGSGTLC
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82.6
0.73
0.8
76.7
31.9
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
59
0.26
1.7
70.77
40.7

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010455
10717508 - 10744851
27344
ENSAPLT00000021339
10717508 - 10744851
27344