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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10729693_10730092_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10729693 - 10730092
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ATCACTTAAACT
Flanking Amino Acid:
NSFYGYVMRKGARWYSMEMA
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.8
38.1
Major BPS
69
0.47
1
69.9
32.6
Major PPT
80.5
0.69
0.8
74.8
33.5
Minor 5ss
36
-1.6
2.9
40.9
45.4
Minor BPS
59.3
0.37
1.7
74.63
42.4

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344