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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10730186_10730438_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10730186 - 10730438
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTCTCCTGAGTG
Flanking Amino Acid:
TQARELIEQIGRPLELDTDG
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.3
0.64
0.7
76.7
25.3
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
49.7
-0.1
1.8
55.83
45.9

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344