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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10733459_10733746_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10733459 - 10733746
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
CTGCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAG
U12 Branch Point Sequence:
TGGGTAGTAAGT
Flanking Amino Acid:
KKPEGSPVTERAIPLAIFQA
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
52.7
0.07
1.6
61.7
43.1
Major PPT
80.7
0.69
0.8
72.4
37.7
Minor 5ss
40.8
-1
3.2
55.8
48.4
Minor BPS
39.5
-0.7
2.3
56.66
45.9

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344