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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10735148_10735597_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10735148 - 10735597
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGT
5'SS Class:
major
3'SS Sequence:
CTGTGTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCACCTTGAACC
Flanking Amino Acid:
ILDLPWQIVQIAETSQPGLF
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
61
44.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.3
0.59
0.9
69.7
36.7
Minor 5ss
36.6
-1.5
3.7
56.7
47.4
Minor BPS
53.1
0.08
1.5
57.35
41.2

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344