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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10739384_10740092_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10739384 - 10740092
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGTTTCTTCTTA
Flanking Amino Acid:
EINNPGCYSTVCLELDIQSL
Intron Amino Acid Position:
1728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
82
0.72
0.7
81.3
30.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
42.5
-0.5
3.5
67.16
40

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344