About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10744310_10744460_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10744310 - 10744460
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCCC
5'SS Class:
major
3'SS Sequence:
CCTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGGCAG
U12 Branch Point Sequence:
CTTCCTTTTCCT
Flanking Amino Acid:
GEFALTISSQVFMEHITIFQ
Intron Amino Acid Position:
2249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
62.4
42.4
Major BPS
38.5
-0.7
1.7
42.8
49.4
Major PPT
85.8
0.81
0.7
80.7
24.6
Minor 5ss
45.2
-0.5
2.7
60.3
44.3
Minor BPS
42.3
-0.5
3.6
73.12
43.9

Associated Gene:

Gene:
POLE
Ensembl Gene ID:
ENSAPLG00000009950
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021339
10717508 - 10744851
27344
ENSAPLT00000010455
10717508 - 10744851
27344