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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10746268_10746338_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10746268 - 10746338
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAGCCCTGACCT
Flanking Amino Acid:
LATALTSVGLGSFICDWILL
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
72.9
0.51
0.9
65
36.3
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.8
-0
1.8
63.56
46.1

Associated Gene:

Gene:
P2RX2
Ensembl Gene ID:
ENSAPLG00000010928
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011474
10745614 - 10750122
4509