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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10747345_10747786_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10747345 - 10747786
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCCCTCTCACA
Flanking Amino Acid:
NIHFPRFGFSKGNIQAAESG
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.3
0.48
0.9
62.4
39.8
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
45.7
-0.3
2
56.78
42.8

Associated Gene:

Gene:
P2RX2
Ensembl Gene ID:
ENSAPLG00000010928
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011474
10745614 - 10750122
4509