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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10747868_10748069_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10747868 - 10748069
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTACTG
5'SS Class:
major
3'SS Sequence:
CTCTTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTGCTCACTC
Flanking Amino Acid:
AWCPVDGGSISESLAEMASQ
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
59.4
45.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.3
0.7
0.7
76.4
25.7
Minor 5ss
34.6
-1.8
3.4
48.1
47.4
Minor BPS
43.8
-0.4
2.1
53.64
44.9

Associated Gene:

Gene:
P2RX2
Ensembl Gene ID:
ENSAPLG00000010928
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011474
10745614 - 10750122
4509