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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10748720_10748921_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10748720 - 10748921
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GGCTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGTCCTGTGACC
Flanking Amino Acid:
DVGEYVSPPEGGSTFSILTR
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
72.8
0.51
1
65
41.2
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
51.5
0.03
2
67.87
37.9

Associated Gene:

Gene:
P2RX2
Ensembl Gene ID:
ENSAPLG00000010928
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011474
10745614 - 10750122
4509