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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10749058_10749392_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10749058 - 10749392
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTTTCCCATCC
Flanking Amino Acid:
LQLLVLLYFTGYVFIIQKGY
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
82.7
0.74
0.7
77.1
24.9
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
46.1
-0.3
2.1
62.78
42.8

Associated Gene:

Gene:
P2RX2
Ensembl Gene ID:
ENSAPLG00000010928
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011474
10745614 - 10750122
4509